sexta-feira, 6 de julho de 2012

Research postdoc positions: FMRIB (Oxford MRI), OHBA (Oxford MEG) and Donders, Nijmegen

The FMRIB Analysis Group, OHBA (the Oxford MEG Centre) and the Donders Institute, Nijmegen, Netherlands have jointly received from the Wellcome Trust a Strategic Award to develop Integrated Brain Imaging for Neuroscience Research and Clinical Practice. We are looking for excellent researchers with a strong technical background, ideally in developing Neuroimaging Analysis Methods (approaches, algorithms and software) for MRI and MEG, but also with experience in other areas of Engineering/Applied Mathematics, Statistics, Computer Science and Physics.  This work will feed into future versions of FSL.

Several positions are to be filled in the areas of functional and structural brain modelling for MRI and MEG data.

Formal adverts have now been placed for two positions at FMRIB, and positions at OHBA and Donders will be advertised shortly.
https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.jobspec?p_id=103554
https://www.recruit.ox.ac.uk/pls/hrisliverecruit/erq_jobspec_version_4.jobspec?p_id=103552

Project overview:

We have recently been awarded a 40-person-year Strategic Award by
the Wellcome Trust – “Integrated Multimodal Brain Imaging for Neuroscience Research and
Clinical Practice”. Advances in neuroimaging have given unprecedented access to in vivo
measurements of brain function, structure and connectivity, but the full potential is not being
realized due to a lack of suitable analysis tools to explore relationships between, and
integrate across, modalities. Our overall goal is to bring multimodal imaging to the forefront
of neuroscience and clinical research in order to provide new biomarkers and insights into
disease mechanisms, explore aging and developmental processes, increase the scope for
large neuroimaging studies and improve clinical decision-support for patients. We will
generate new methodology, algorithms and software tools for integrated modelling and
analysis of multimodal neuroimaging data: specifically, structural MRI, diffusion MRI,
resting/task functional MRI and MEG. Key technical goals are: parcellation of the brain into
functional and structural units, and alignment of brain structure and function across multiple
subjects, in both cases utilizing all modalities simultaneously; computational modelling of structural
and functional networks in the brain that mediate information flow; developing machine learning
methods for multivariate classification and probabilistic parametric atlases using structural, functional
and network information, to develop biomarkers and investigate disease mechanisms. To maximize
practical impact we will be translating these methods into user-accessible, well-supported
software tools for both basic and clinical neuroimaging scientists worldwide.

quinta-feira, 5 de julho de 2012

Two-year postdoc vacancy at Uni. South Australia, in Computational Neuroscience

Dear colleagues,

The University of South Australia's Institute for Telecommunications Research (ITR) is seeking expressions of interest for an open Postdoctoral Research Fellow position. 

The Research Fellow will conduct theoretical research aimed at understanding the neurobiological communication and information storage mechanisms that exist within mammalian brains. The approach will be to combine mathematical modelling with computational simulations. The project is aligned with an Australian Research Council funded Discovery Grant, and is in collaboration with University of British Columbia, Canada.

The position is for two years full time, as follows:

-Salary range: AU$79,145 - AU$93,986 pa 
-Total remuneration range approximately: AU$87K - AU$103K pa; This includes salary, employer super contributions of 9% salary and annual leave loading.

It is essential that applicants possess (or are soon to submit) a doctorate (or equivalent research experience) in the area of computational and theoretical neuroscience, or closely related areas including electronic engineering, mathematical/statistical physics, applied mathematics, biophysics, biomedical engineering and mathematical biology.

The successful application will also be able to demonstrate expert mathematical knowledge in at least one of the following four areas: nonlinear dynamics; information theory; numerical methods; signal processing
For the full position description and selection criteria, please see http://www.itr.unisa.edu.au/news/pd/research-fellow-position-description-m_mcdonnell
The successful applicant will be a member of ITR’s highly interdisciplinary Computational and Theoretical Neuroscience Laboratory, working with Principle Investigator, Dr Mark McDonnell. The Lab has excellent computational facilities, provides a stimulating interdisciplinary research environment and interacts with many international research collaborators.
For more information about the Lab please see: www.itr.unisa.edu.au/CTNL/
At this stage, we are seeking expressions of interest, prior to setting an application closing date.  Please contact Dr Mark McDonnell by email to express interest; send your CV and list of publications to: mark.mcdonnell@unisa.edu.au

Regards

Dr Mark D. McDonnell
Senior Research Fellow

Principal Investigator
Computational and Theoretical Neuroscience Laboratory
http://www.itr.unisa.edu.au/research/ctnl/

Institute for Telecommunications Research
University of South Australia
Building W, Mawson Lakes Campus
Mawson Lakes SA 5095 AUSTRALIA

Phone:  +61 8 8302 3341
Fax:  +61 8 8302 3817

URL: http://people.unisa.edu.au/Mark.McDonnell
Email: mark.mcdonnell@unisa.edu.au 

quarta-feira, 4 de julho de 2012

Two fully funded PhD fellowships (Early Stage Researcher) in Computational Neuroscience



Two fully funded PhD fellowships (Early Stage Researcher) in Computational Neuroscience
 
1. Emergence of collective dynamics in scale-free neuronal networks    (ESR14)
 
2. Measures of spike train synchrony    (ESR15)
 
within the Marie Curie Initial Training Network - ‘Neural Engineering Transformative Technologies’ (NETT) at the Institute of Complex Systems (ISC), CNR, Florence, Italy.
 
Gross Salary per annum:  42,028 € (Living Allowance) plus 9,290 - 13,272 € (Mobility Allowance) depending on circumstances
 
Required titles:  MSc in Physics, Mathematics or Engineering
 
Applications: The applications should be prepared and send as detailed on this webpage.
 
Closing date for both positions: 1 September 2012
 
 
Applications are invited for the above posts to work with Dr. Alessandro Torcini and Dr. Thomas Kreuz in the Computational neuroscience group at ISC, Florence. This world leading group combines theoretical investigations (e.g., on nontrivial collective phenomena in neuronal populations) with practical applications (e.g., spike train analysis). The group is one of the main participants in the Center for the Study of Complex Dynamics (CSDC) created with the purpose of coordinating interdisciplinary training and research activities. CSDC researchers include physicists, control engineers, mathematicians, biologists and psychologists. Both full-time posts are available from 1st of January 2013 and will be offered on a fixed-term contract for a period of 36 months.
 
The two successful candidates will register for a 3 year PhD degree at the University of Florence in Information Technology, Systems and Telecommunication (Course on Nonlinear Dynamics and Complex Systems). Candidates must be in the first 4 years of their research careers and not been awarded a doctorate degree. Preference will be given to candidates with experience in mathematical and computational neuroscience. As part of our commitment to promoting diversity we encourage applications from women. To comply with the Marie Curie Actions rule for mobility applicants must not have resided, worked or studied in Italy for more than 12 months in the 3 years prior to Sept 2012. The fellowships will include international internships so the candidates must be able to move between countries as necessary.

 
1. Marie Curie Actions Early Stage Researcher (PhD fellowship)
 
Emergence of collective dynamics in scale-free neuronal networks   (ESR14)
 
The successful candidate will work within the framework of nonlinear dynamics and computational neuroscience. His/her main task will be the study of the macroscopic and microscopic evolution of neural networks with various topologies. In particular, he/she should analyze the robustness of collective solutions in presence of an external feedback. One of the main tasks will be the development of efficient numerical codes to simulate the networks' dynamics and to develop tools to analyze their macroscopic properties. This fellowship includes a three-month secondment working with either Prof. Stephen Coombes at the School of Mathematical Sciences in Nottingham, UK, or Prof. Jordi Garcia-Ojalvo in the Department of Physics and Nuclear Engineering, Universitat Politecnica de Catalunya, Spain. It also includes a three-month internship with the project industrial partner, bioPmed in Piemonte near Turin, Italy.
 
The candidates should have a strong background in at least one of the following fields: nonlinear dynamics, statistical physics or computational neuroscience as well as solid experience in scientific programming (with languages Fortran and/or C).
 
Informal enquiries should be addressed to Dr. Alessandro Torcini (alessandro.torcini@cnr.it).

 
2. Marie Curie Actions Early Stage Researcher (PhD fellowship)
 
Spike train analysis from neuronal networks   (ESR15)
 
The successful candidate will work within the framework of computational neuroscience and signal processing. His/her main task will be the analysis of electrophysiological data, in particular recordings of single- and multi-unit spike trains as well as local field potentials and EEG all of which will be provided by the international partner institutions. One of the principal objectives will be the improvement of methods to estimate spike train synchrony and in particular the development and extension of a Matlab toolbox for spike train analysis. Furthermore, the candidate will help to adapt other nonlinear time series analysis tools to the specific needs of the collaborating nodes in the Netherlands, France, Portugal, Spain, and the UK. This fellowship includes a three-month secondment to either Dr. Simon Schultz in the Department of Bioengineering at Imperial College London, UK or Prof. Bert Kappen at the Radboud University Nijmegen, Netherlands. It also includes a three-month internship in the third year with the project industrial partner, bioPmed in Piemonte near Turin, Italy.
 
The candidate should have a strong background in computational neuroscience and  data analysis as well as solid experience in programming (Matlab).
 
Informal enquiries should be addressed to Dr. Thomas Kreuz (thomas.kreuz@cnr.it).



Dr. Thomas Kreuz
Istituto dei Sistemi Complessi, CNR
Via Madonna del Piano 10
50119 Sesto Fiorentino (Italy)
Tel: +39-055-522-6630
Cell: +39-349-0748506
Fax: +39-055-522-6683
Email: thomas.kreuz@cnr.it
Webpage: http://www.fi.isc.cnr.it/users/thomas.kreuz/






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Two chair positions at Imperial College London

Dear all,

There are two Chair (full professor) positions open in the Department of Bioengineering at Imperial College London. One of the Chairs might be appointed as Head of Department. Highlighted areas include Neurotechnology, which I take to include computational neuroscience.

===

Salaries Negotiable
South Kensington Campus

Post 1: Head of the Department of Bioengineering and Director of the Institute of Biomedical Engineering

Post 2: Chair in Bioengineering

We are seeking to appoint an outstanding leader to act as Head of our rapidly growing Department of Bioengineering and as Director of the associated cross-faculty Institute of Biomedical Engineering. The appointee will hold a Chair in the Department and will provide the academic leadership, management skills, vision and drive to develop further the international standing of the Department and Institute. Applications are also invited for a second Chair in the Department of Bioengineering.

Candidates for both posts will be expected to direct high-quality, innovative research programmes that will advance the reputation of the Department and College in relevant areas. Currently these areas include: Biomechanics; Biomedical devices, sensors and circuits; Biomedical imaging and medical information systems; Cellular, molecular and synthetic biology; Implants and regenerative medicine; and Neurotechnology. The Department is also keen to enter the area of cancer bioengineering. Applicants should demonstrate: an internationally-recognised research portfolio that incorporates modern developments in bioengineering and addresses problems of importance in the understanding of biological phenomena and/or the treatment of clinically significant pathologies; a commitment to excellence in education, with experience in teaching at all levels; and qualities and skills that will foster collaboration locally, nationally and internationally. Candidates will also have a sustained track record in attracting high levels of research funding. Candidates should have an advanced degree (PhD or equivalent) in an appropriate science or engineering discipline or a medical degree (e.g. BMBS, MB BChir, BM BCh, MBBS). Candidates for Post 1 should additionally demonstrate successful professional leadership and management.

Imperial College was ranked 3rd in Europe and 8th worldwide in the 2011-12 Times Higher Education Supplement league tables. The Department of Bioengineering has a long and distinguished history; its pioneering research helped define the discipline. In the 2008 Research Assessment Exercise, 75% of its output was judged either world leading or internationally excellent, confirming its pre-eminent position. It currently teaches approximately 500 undergraduate, MSc and PhD students. The Institute hosts the Centre for Synthetic Biology and Innovation and the Centre for Bio-Inspired Technology; its 7 Technology Networks draw together scientists, clinicians and engineers from across the College to create progress in medical diagnosis and treatment through multidisciplinary collaboration. The Department and Institute can be explored at


Candidates should submit a full curriculum vitae (including a full list of publications and teaching experience), a description of their research including future plans (2,000 words maximum) and the names and contact details of three academic referees.  Candidates are also asked to indicate whether they wish to be considered for the post of Head of Department/Institute Director.

Informal enquiries may be made to Professor Peter Weinberg (Director of Research for the Department and Chair of the Search Committee) at p.weinberg@imperial.ac.uk, or by telephone: +44 (0)207 594 1517.

Our preferred method of application is online via our website at the following link: http://www3.imperial.ac.uk/employment (select “Job Search” and enter the job reference no EN20120095FH). Please complete and upload the application form as directed and submit any other relevant supporting documents such as your full CV. 

If you are unable to apply online or have any queries please contact: Maria Monteiro, Senior Appointments Coordinator, email address: m.monteiro@imperial.ac.uk, telephone number: 00 44 (0) 207 5945498

===

Simon R Schultz
Director of Postgraduate Studies (Research)
Royal Society Industry Fellow and Senior Lecturer
Department of Bioengineering
Imperial College London
Member of National Committee, British Neuroscience Association

terça-feira, 3 de julho de 2012

Positions available at RIKEN Brain Science Institute: computational and fMRI studies

Dear colleagues,

Applications are invited for opening positions for postdoctoral
scientists to work at the Laboratory for Integrated Theoretical
Neuroscience (Lab Head: Hiro Nakahara; http://www.itn.brain.riken.jp)
,
RIKEN Brain Science Institute. Our laboratory is interested in
elucidating neural mechanisms of decision making, and value-based
decision making and reward-oriented behavior in particular, together
with fostering computational foundations of neural interactions. We
primarily use computational approaches (e.g., "modeling", "analyzing",
and "developing"; see below) and also conduct human fMRI experiments. We
seek enthusiastic and well-qualified scientists to join in our research
activities, particularly under the following three topics:

1) Modeling neural computations of value-based decision making and
reward-oriented behavior

2) Analyzing neural data for our interest, and developing methods of
analysis for understanding neural interactions

3) Human fMRI experiment to address value-based decision making,
including social setting

Please refer to the descriptions below for the details of each topic
(and some more information follows the descriptions). Applicants should
have, or be expecting to receive, a Ph.D., and have research interest
and background in the area of (or related to) research described below.
Applications will be accepted until the position is filled. Screening
will be done on a rolling basis, and applications submitted by the mid
of August, 2012 will be treated equally in the first screening. Informal
inquiry should be sent to itninfo@brain.riken.jp.

Please send your application to itninfo@brain.riken.jp with the
following materials: (A) a cover letter specifying the job opportunity
you are interested in, (B) curriculum vitae including publication list,
(C) research statement describing your past achievements and future
interests, (D) the names and contact information of three references
(including the current supervisor, if available) with a brief
description of your relationship to each reference, and (E) (optional)
any additional information you think might be useful (e.g. additional
skills and background, general interests, and so on).

1) Modeling neural computations of value-based decision making and
reward-oriented behavior

We build computational and mathematical models of neural processes for
value-based decision making and reward-oriented behavior. We are
particularly interested in adaptive or learning nature of the behavior,
e.g., reinforcement learning. We also seek how value-based decisions or
reward-oriented behavior are supported by neural processing and
representation of the environment and potential outcomes, and further by
representational and structural learning of those. Circuit-wise, we are
interested in how the basal ganglia circuit, including dopamine neuron
functions, contribute to these functions, in relation to prefrontal
areas and other subcortical areas (e.g., lateral habenula, amygdala).

2) Analyzing neural data for our interest, and developing methods of
analysis for understanding neural interactions

We analyze neural data with our interest described in the topic 1),
wherein the data is often supplied from by our collaborators (e.g. data
of dopamine neural activity from behaving animals’ experiment), or by
our own in-house fMRI experiments. In addition, or possibly
alternatively, we are interested in developing methods of analysis to
make sense of massively simultaneously recorded neural data with an
emphasis on understanding consequences of neural interactions, including
higher-order interactions.

In both the topics 1) and 2), applicants are expected to have a
qualified record and research experience in computational neuroscience
in the area described above or related area. A strong quantitative
background in neuroscience, mathematics, computer science, statistics,
machine learning, physics or related area is expected. The successful
candidate should have good general computer skills, and especially good
computer programming skills (e.g., Matlab). Close collaboration with
experimental studies is emphasized; in-house fMRI and psychophysics
experiments, and frequent collaborative research with experimental
laboratories.

3) Human fMRI experiment to address value-based decision making,
including social setting

We conduct human fMRI experiment to investigate value-based decision
making, reward-oriented behavior, and/or related behavior including
social setting, e.g. social value-based decisions. For instance, using
model-based analyses, we are interested in investigating how values
associated with different options is processed in the brain before
making decisions, and/or how an understanding of another person’s
behavior affects one’s own value-based decisions.

Under the topic 3), the ideal candidate should have a qualified record
and research experience in human fMRI experiments in the research area
described above or related area, but candidates with a strong record and
experience in different research areas, using fMRI, psychophysics or
related technique (e.g., single-unit neurophysiology) are also
considered. Candidates who wish to pursue experimental studies by
linking experimental and computational approaches are encouraged to
apply. The successful candidate should have a strong training in
experimental methodology with solid quantitative skills. Research using
fMRI is conducted by using RIKEN BSI's 4 Tesla MRI system, in
collaboration with Dr. Kang Cheng (RIKEN BSI, fMRI Support Unit) and
other excellent collaborators.

For all the topics 1)-3), the successful candidate will be expected to
conduct independent research as well as work closely in a team;
therefore, a good balance of self-reliance and collegiality, implying a
good attitude toward balancing independence and inter-dependence, is
required. Good communication skills are essential, also being fluent in
spoken and written English (working language is English at RIKEN Brain
Science Institute, while there are also opportunities to take Japanese
classes.)

RIKEN Brain Science Institute is located near Tokyo, Japan
(http://www.brain.riken.jp). Starting salaries will be commensurate with
relevant ability and experience. Subsequent contracts, including salary
adjustment, will be determined and renewed annually, upon review, for up
to five years.

Best wishes,

Hiro

Hiroyuki Nakahara, Ph.D.
Laboratory for Integrated Theoretical Neuroscience
RIKEN Brain Science Institute
http://www.itn.brain.riken.jp

segunda-feira, 2 de julho de 2012

Several postdoctoral positions are available in IDEA lab


Several postdoctoral positions are available in IDEA lab
(https://www.med.unc.edu/bric/ideagroup), UNC-Chapel Hill, NC.

Position 1 (Deformable Segmentation): The successful candidate should
have a strong background on Electrical or Biomedical Engineering, or
Computer Science, preferably with emphasis on image feature
extraction, shape representation, and shape statistics. Experience on
medical image segmentation using deformable surface, level sets, and
graph cut is highly desirable. People with machine learning background
on image features and shape statistics are particularly encouraged to
apply. Strong knowledge on programming (good command of LINUX, C and
C++, scripting, and Matlab) are desirable. The research topic will be
the development and validation of statistical deformable segmentation
methods for prostate and brain.

Position 2 (Brain Image Registration):  The successful candidate
should have a strong background on Electrical or Biomedical
Engineering, or Computer Science, preferably with emphasis on image
analysis, or computer vision. Experience on medical image registration
and analysis is highly desirable. People with group-wise registration
or 4D registration are particularly encouraged to apply. Knowledge on
neuroscience and programming background (good command of LINUX, C and
C++, scripting, and Matlab) are desirable. The research topic will be
the development and validation of 3D, 4D, and group-wise image
registration methods for brain image analysis.

The successful candidates will be part of a diverse group including
radiologists, psychologists, physicists, biostatistician, and computer
scientists, and will build upon the group's previous work on medical
image analysis. If interested, please email resume to Dr. Dinggang
Shen (dgshen@med.unc.edu).

Postdoctoral Fellowship in neural engineering at CEA Grenoble, France.

Postdoctoral Fellowship in neural engineering at CEA Grenoble, France.

Post-doctoral and PhD positions are available to join the group of Dr. Tetiana Aksenova in CLINATEC (CEA/LETI/CLINATEC) at the French Alternative Energies and Atomic Energy Commission in Grenoble (http://www-leti.cea.fr/fr/Decouvrez-le-Leti/Les-plateformes-d-innovation2/Clinatec).
CLINATEC, a dynamic non-profit scientific research organization, is seeking talented researchers to contribute to the Brain Computer Interface (BCI) project. Integrated to the signal processing team the scientist will collaborate with researchers of Clinatec whose expertise spans mathematics, computer science, microelectronics, and neuroscience with the goal of performing functional BCI system with multiple degrees of freedom.
RESPONSIBILITIES:
Develop signal processing strategies, algorithms, software procedures and deploy computational tools for knowledge extraction, offline and online real time neuronal signal processing.
REQUIREMENTS:
Relevant backgrounds in computer science and applied mathematics: applied statistics, signal processing, adaptive modeling, machine learning and fast calculations for real time applications. The ideal candidate will have a Doctoral/Master degree, or equivalent, in a relevant discipline (Computer Science, Mathematics, Physics) with an emphasis on computational approaches to the neuronal systems analyses. Programming in Matlab and C/C++ will be part of the project.
Candidates with the experience in ECoG/MEG/EEG  data analysis will be preferred.
TERMS:
A contract of 24 months will be offered to the successful candidates.
COMPENSATION:
Salary is competitive and depends on the applicant’s qualifications and experience. It includes a full social security and health coverage.
HOW TO APPLY:
To apply, please send a cover letter, names of two references and a CV to Dr. Tetiana Aksenova (tetiana.aksenova@cea.fr), Corinne Mestais (corinne.mestais@cea.fr).
_____________________

Dr. Tetiana Aksenova,
Chair RTRA
CEA/LETI/CLINATEC,
MINATEC Campus, 17 rue des Martyrs
38054 GRENOBLE Cedex 9